Statistical Genomics

Index - Principales of Statistican Genomics

My personal notes on the book, it's only a summary with I find important.

Part I Genetic Linkage Map

  1. Map Functions
  2. Recombination Fraction
    1. Mating Designs
  3. Genetic Map Construction
  4. Multipoint Analysis of Mendelian Loci

Part II Analysis of Quantitative Traits

  1. Basic Concepts of Quantitative Genetics
  2. Major Gene Detection
  3. Segregation Analysis
  4. Genome Scanning for Quantitative Trait Loci
  5. Interval Mapping
  6. Interval Mapping for Ordinal Traits
  7. Mapping Segregation Distortion Loci
  8. QTL Mapping in Other Populations
  9. Random Model Approach to QTL Mapping
  10. Mapping QTL for Multiple Traits
  11. Bayesian Multiple QTL Mapping
  12. Empirical Bayesian QTL Mapping

Part III Microarray Data Analysis

  1. Microarray Differential Expression Analysis
  2. Hierarchical Clustering of Microarray Data
  3. Model-Based Clustering of Microarray Data
  4. Gene Specific Analysis of Variances
  5. Factor Analysis of Microarray Data
  6. Classification of Tissue Samples Using Microarrays
  7. Time-Course Microarray Data Analysis
  8. Quantitative Trait Associated Microarray Data Analysis
  9. Mapping Expression Quantitative Trait Loci